|   | ALIGNMENT DOT PLOTS | 
Dot plot sequence comparisons
| Program name | Description | 
|---|---|
| dotmatcher | Draw a threshold dotplot of two sequences | 
| dotpath | Draw a non-overlapping wordmatch dotplot of two sequences | 
| dottup | Displays a wordmatch dotplot of two sequences | 
| polydot | Draw dotplots for all-against-all comparison of a sequence set |